Merge branch 'yomal-dev' into 'master'

Yomal dev

See merge request !8

ml/app.py

 from inference import *
 from flask_cors import CORS
-from flask import Flask, Response, request
+from flask import Flask, Response, jsonify, request
 from pymongo import MongoClient
 import threading
 import requests
-import schedule
+# import schedule
 import time
 import random
 from datetime import datetime
+from mongodb_api import *
+
 
 app = Flask(__name__)
 CORS(app)
 
+
 def risk():
     risk_level, HeartRateArr, BloodOxygenLevelArr, BodyTemperatureArr = risk_level_prediction()
+    if risk_level == "Risky":
+        requests.get('http://localhost/api/risk-alert')
     print(risk_level)
-    
+
+
+def diwo():
+    exercise_plan, diet_plan, HeartRateArr, BloodOxygenLevelArr, BodyTemperatureArr = diet_workout_prediction()
+    print(diet_plan)
+
+
 def update_risk_level():
     while True:
         risk()
         time.sleep(120)
 
+
+def update_diet_plan():
+    # schedule.every().day.at("19:05:00").do(diwo)
+    while True:
+        diwo()
+        # schedule.run_pending()
+        time.sleep(60)
+
+
 thread1 = threading.Thread(target=update_risk_level)
 thread1.start()
 
-print("test")   
+thread2 = threading.Thread(target=update_diet_plan)
+thread2.start()
+
+print("test")
+
+@app.route('/inference', methods=['POST'])
+def perform_inference():
+    data = request.json.get('data')
+    data = json.loads(data)
+    print(data)
+    
+    api_data = data 
+
+    #  Perform inference and get the result
+    result = get_Android_data(api_data)
+    
+    print(result)
+    
+    if result == "Patient has dementia":
+        # Return a specific response for dementia case
+        return jsonify({'message': 'This patient has dementia.'})
+    else:
+        # Return a specific response for non-dementia case
+        return jsonify({'message': 'This patient does not have dementia.'})
+
+
 
 @app.route('/record', methods=['POST'])
 def record():
@@ -35,8 +80,8 @@ def record():
     spo2 = data['spo2']
     # temperature = random.uniform(29, 38)
     # temperature = round(temperature, 2)
-    # bpm = random.randint(60, 100)
-    # spo2 = random.randint(80, 110)
+    bpm = random.randint(60, 100)
+    spo2 = random.randint(80, 110)
     print(temperature, bpm, spo2)
     health_collection = db['health']
     health_document = {
@@ -65,6 +110,3 @@ if __name__ == "__main__":
         threaded=False,
         use_reloader=True
     )
-
-
-

ml/inference.py

+import json
+import pickle
+import numpy as np
+import pandas as pd
+import tensorflow as tf
+from math import sin, cos, sqrt, atan2, radians, asin
+from pymongo import MongoClient
+from datetime import datetime
+
+try:
+    client = MongoClient(
+        "mongodb+srv://eshan:78NCxoxRgTBQAVyg@health.7yovxrt.mongodb.net/?retryWrites=true&w=majority")
+    # client = MongoClient(
+    #     "mongodb+srv://admin:admin@early-detection.jevtz.mongodb.net/")
+    db = client["Heal"]
+    client.server_info()
+    print("DB accessed !")
+
+except Exception as e:
+    print("*************************************************************")
+    print(e)
+    print("*************************************************************")
+
+##################################### PARAMS #########################################
+
+risk_level_mapping = {
+    0: "situation doesn't exist",
+    1: "Manageable",
+    2: "Normal Healthy",
+    3: "Risky"
+}
+
+excercise_plan_mapping = {
+   1: '''{"plan": "No exercises", "exercise": "Reading,Solving puzzles,Art and Craft,Mindful Relaxation"}''',
+    0: '''{"plan": "Low Risk Exercises", "exercises": " Walking,Seated Leg Lifts,Wall Push-Ups,Neck Stretches,Deep Breathing Exercises"}''',
+    2: '''{"plan": "Low to Moderate Risk Exercises", "exercises": "Tai Chi,Water Aerobics,Yoga,Stationary Biking,Resistance Band Exercises"}''',
+    3: '''{"plan": "Moderate to High Risk Exercises", "exercises": "Extreme Heat Yoga,High-Impact Sports,Advanced Martial Arts,High-Intensity Dance Workouts,Rapid or Excessive Stretching,Acrobatics"}'''
+}
+
+
+diet_plan_mapping = {
+    1: '''{"plan": "No food plan"}''',
+    0: '''{"plan": "Low Cholesterol Food", "breakfast": "Vegetable roti (flatbread filled with a mix of grated vegetables) with a side of fresh fruit. Egg hoppers (appa) with a side of tomato and cucumber salad. Rava upma (semolina cooked with vegetables) with a side of fresh fruit. Oatmeal topped with sliced almonds and fresh berries.", "lunch": "Grilled fish curry with tempered green beans and steamed red rice. Lentil curry (parippu) with tempered spinach and brown rice. Sambar (lentil and vegetable stew) with brown rice and a cucumber salad. Grilled vegetable wrap with whole wheat tortilla, hummus, and avocado.", "dinner": "Stir-fried chicken and vegetable curry with quinoa. Grilled shrimp skewers with mixed vegetable stir-fry and red rice. Millet dosa with tomato chutney and a mixed vegetable curry. Baked chicken breast with quinoa and steamed asparagus"}''',
+    2: '''{"plan": "Balanced Diet with All Nutrients", "breakfast": "Coconut milk rice (kiribath) with lunu miris (spicy onion sambol) and boiled eggs. String hoppers (idiyappam) with dhal curry and coconut chutney. Greek yogurt with granola, banana slices, and a drizzle of honey. Idli (steamed rice cakes) with coconut chutney and sambar.", "lunch": "Chicken curry with a side of mixed vegetable curry and quinoa. Fish ambul thiyal (sour fish curry) with red rice and gotu kola salad. Quinoa salad with mixed vegetables (cucumbers, tomatoes, bell peppers) and a lemon-tahini dressing. Vegetable biryani with cucumber raita and a side of mixed vegetable kurma", "dinner": "Eggplant curry with coconut roti and a cucumber and tomato salad Mixed vegetable kottu roti with a side of chicken curry. Channa masala (spiced chickpea curry) with roti and a spinach salad. Grilled lean steak with roasted potatoes, sautéed kale, and a side of mixed beans."}''',
+    3: '''{"plan": "Hot Beverages & Meals Rich in Potassium", "breakfast": "Spiced tea (Ceylon tea with spices like cinnamon and cardamom) with string hoppers and coconut sambol. Coconut water with hopper pancakes (appa) and lunu miris (spicy onion sambol). Banana and spinach smoothie with almond milk, chia seeds, and a pinch of cinnamon. Masala chai with medu vada (lentil fritters) and coconut chutney.", "lunch": "Jackfruit curry with basmati rice and a side of tempered spinach. Chicken curry with potato and green bean curry, served with red rice. Lentil soup with carrots, celery, and a squeeze of lemon juice Avial (mixed vegetable curry in coconut gravy) with adai (mixed lentil dosa) and a beetroot poriyal.", "dinner": " Lentil soup with pumpkin and a side of papadums Beetroot curry with coconut milk rice(kiribath) and a cucumber salad. Baked cod with steamed brown rice, roasted Brussels sprouts, and a sprinkle of sesame seeds. Tomato rasam(spicy tomato soup) with lemon rice and a spinach poriyal"}'''
+}
+
+##################################### LOAD MODELS #########################################
+
+risk_model = tf.keras.models.load_model('weights/future_prediction.h5')
+risk_model.compile(
+    optimizer='adam',
+    loss='categorical_crossentropy',
+    metrics=[
+        tf.keras.metrics.CategoricalAccuracy(),
+        tf.keras.metrics.Precision(),
+        tf.keras.metrics.Recall(),
+        tf.keras.metrics.AUC()
+    ])
+
+with open('weights/scalar_future_prediction.pkl', 'rb') as f:
+    risk_scalar = pickle.load(f)
+
+
+diet_workout_model = tf.keras.models.load_model(
+    'weights/diet_workout_prediction.h5')
+diet_workout_model.compile(
+    loss='sparse_categorical_crossentropy',
+    optimizer='adam',
+    metrics=['accuracy']
+)
+
+with open('weights/scalar_diet_workout_prediction.pkl', 'rb') as f:
+    diet_workout_scalar = pickle.load(f)
+
+##################################### PREDICTION #########################################
+
+
+def risk_level_prediction():
+    health_collection = db["health"]
+    health_data = pd.DataFrame(list(health_collection.find()))
+    sample_data = health_data[-50:][["HeartRate",
+                                     "BloodOxygenLevel", "BodyTemperature"]]
+    # sample_data = health_data.sample(
+    #     frac=50/len(health_data))[["HeartRate", "BloodOxygenLevel", "BodyTemperature"]]
+
+    HeartRateArr = sample_data["HeartRate"].values.tolist()
+    BloodOxygenLevelArr = sample_data["BloodOxygenLevel"].values.tolist()
+    BodyTemperatureArr = sample_data["BodyTemperature"].values.tolist()
+
+    Xinf = sample_data.values
+    Xinf = risk_scalar.transform(Xinf)
+    Xinf = Xinf.reshape(1, 50, 3)
+
+    risk_level = risk_model.predict(Xinf).squeeze()
+    risk_level = np.argmax(risk_level)
+    risk_level = risk_level_mapping[risk_level]
+    risk_level_collection = db['risk_level']
+    risk_level_document = {
+        "risk_level": risk_level,
+        "created_at": datetime.now(),
+        "updated_at": datetime.now()
+    }
+    risk_level_collection.insert_one(risk_level_document)
+    return risk_level, HeartRateArr, BloodOxygenLevelArr, BodyTemperatureArr
+
+
+def diet_workout_prediction():
+    health_collection = db["health"]
+    health_data = pd.DataFrame(list(health_collection.find()))
+    sample_data = health_data[-50:][["HeartRate",
+                                     "BloodOxygenLevel", "BodyTemperature"]]
+
+    HeartRateArr = sample_data["HeartRate"].values.tolist()
+    BloodOxygenLevelArr = sample_data["BloodOxygenLevel"].values.tolist()
+    BodyTemperatureArr = sample_data["BodyTemperature"].values.tolist()
+
+    Xinf = sample_data.values
+    Xinf = diet_workout_scalar.transform(Xinf)
+
+    exercise_plan_idxs, diet_plan_idxs = diet_workout_model.predict(Xinf)
+    exercise_plan_idxs = exercise_plan_idxs.squeeze()
+    diet_plan_idxs = diet_plan_idxs.squeeze()
+
+    exercise_plan_idxs = np.argmax(exercise_plan_idxs, axis=1)
+    diet_plan_idxs = np.argmax(diet_plan_idxs, axis=1)
+
+    exercise_plans = [excercise_plan_mapping[idx]
+                      for idx in exercise_plan_idxs]
+    diet_plans = [diet_plan_mapping[idx] for idx in diet_plan_idxs]
+
+    mode_exercise_plan = max(set(exercise_plans), key=exercise_plans.count)
+    mode_diet_plan = max(set(diet_plans), key=diet_plans.count)
+
+    diet_plan_collection = db['diet_plan']
+    diet_plan_document = {
+        "diet_plan": mode_diet_plan,
+        "created_at": datetime.now(),
+        "updated_at": datetime.now()
+    }
+    diet_plan_collection.insert_one(diet_plan_document)
+    exercise_plan_collection = db['exercise_plan']
+    exercise_plan_document = {
+        "exercise_plan": mode_exercise_plan,
+        "created_at": datetime.now(),
+        "updated_at": datetime.now()
+    }
+    exercise_plan_collection.insert_one(exercise_plan_document)
+    return mode_exercise_plan, mode_diet_plan, HeartRateArr, BloodOxygenLevelArr, BodyTemperatureArr
+
+
+def haversine(p1, p2):
+    lat1, lon1 = p1
+    lat2, lon2 = p2
+
+    lat1 = float(lat1)
+    lon1 = float(lon1)
+
+    lat2 = float(lat2)
+    lon2 = float(lon2)
+
+    # convert decimal degrees to radians
+    lon1, lat1, lon2, lat2 = map(radians, [lon1, lat1, lon2, lat2])
+
+    # haversine formula
+    dlon = lon2 - lon1
+    dlat = lat2 - lat1
+
+    a = sin(dlat/2)**2 + cos(lat1) * cos(lat2) * sin(dlon/2)**2
+
+    c = 2 * asin(sqrt(a))
+    # Radius of earth in kilometers. Use 3956 for miles. Determines return value units.
+    r = 6371
+    distance_km = c * r
+    return distance_km

ml/model/data/synthetic_dataset.csv

+Diabetic,AlcoholLevel,Weight,MRI_Delay,HeartRate,BloodOxygenLevel,BodyTemperature,Dementia
+0,0.02,85,8,74,91.4,36.15,0
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+0,0.18,83,11,77,98.8,37.05,1
+0,0.26,74,3,75,97.2,36.73,0
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+1,0.05,100,1,76,95.37,36.68,1
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+1,0.02,84,23,79,99.22,36.53,0
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+1,0.21,77,25,92,91.14,36.64,1
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+1,0.29,103,10,67,94.05,37.45,0
+1,0.42,96,3,87,98.44,36.36,1
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+0,0.06,82,7,71,96.02,37.14,0
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ml/mongodb_api.py

+import numpy as np
+import pickle
+import tensorflow as tf
+import pandas as pd
+import pymongo
+from bson import ObjectId
+
+
+# Load the trained model and scaler
+model = tf.keras.models.load_model('weights/health_data_dementia.h5')
+with open('weights/scalar_health_data.pkl', 'rb') as f:
+    scalar = pickle.load(f)
+
+# Function to process new data and make predictions
+def predict_dementia(new_data):
+    # Preprocess the new data
+    new_data = scalar.transform(new_data.reshape(1, -1))
+
+    # Reshape the data to match the model's input shape
+    n_steps, n_features = model.input_shape[1:]
+    X = np.zeros((1, n_steps, n_features))
+    X[0] = new_data
+
+    # Make predictions
+    predictions = model.predict(X)
+
+    # Check the prediction
+    if predictions[0][0] >= 0.5:
+        result = "Patient has dementia"
+    else:
+        result = "Patient doesn't have dementia"
+
+    return result
+
+
+
+# Set up MongoDB connection
+try:
+    client = pymongo.MongoClient("mongodb+srv://ITP:89DbKo5LYRogaw96@cluster0.3agof.mongodb.net/?retryWrites=true&w=majority")
+    db = client["Heal"]
+    print("DB accessed!")
+
+except Exception as e:
+    print("Error while connecting to MongoDB:", e)
+    exit()  # Exit the script if there's a connection error
+
+
+# Create a collection for user data
+user_data_collection = db["health"]
+
+# Function to retrieve user data from MongoDB
+def get_latest_user_data():
+    try:
+        # Sort the documents in descending order by _id (assuming _id is a timestamp)
+        latest_user_data = user_data_collection.find().sort([("_id", pymongo.DESCENDING)]).limit(1)
+
+        if latest_user_data:
+            return latest_user_data[0]
+        else:
+            return None
+    except Exception as e:
+        print("Error while retrieving user data:", e)
+        return None
+
+latest_user_data = get_latest_user_data()
+
+
+if latest_user_data:
+
+    for key, value in latest_user_data.items():
+        print(f"{key}: {value}")
+
+else:
+    
+    print("User data not found.")
+
+# Function to create a new array 
+def get_Android_data(api_data):
+    if latest_user_data is not None and api_data is not None:
+        # Create an array with the required features
+        new_data = np.array([api_data["Diabetic"], api_data["Alcohol_Level"], api_data["Weight"], api_data["MRI_Delay"],
+                              latest_user_data["HeartRate"], latest_user_data["BloodOxygenLevel"], latest_user_data["BodyTemperature"]])
+
+        result = predict_dementia(new_data)
+        
+        return result
+        
+    else:
+        print("User data not found or API data is missing.")
+
+
+
+
+
+